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Education

• Sep 2024 - Current

  Doctor of Philosophy in Computer Science

  (Advisor: Mingxun Wang)

  Department of Computer Science and Engineering

  University of California, Riverside, Riverside, California

  Overall GPA: 4.0/4.0; Major GPA: 4.0/4.0

• Mar 2020 - Feb 2022

  Master of Science in Biological Science

  (Advisor: Daehee Hwang)

  School of Biological Science

  Seoul National University, Seoul, Korea

  Overall GPA: 4.15/4.30 (4.0/4.0); Major GPA: 4.15/4.30 (4.0/4.0)

• Mar 2015 - Feb 2020

  Bachelor of Science in Biological Science

  (Advisor: Daehee Hwang)

  School of Biological Science

  Seoul National University, Seoul, Korea

  Overall GPA: 3.61/4.30 (3.56/4.0); Major GPA: 3.54/4.30 (3.51/4.0)

Publications

Journal

• Chaperonin‐mediated winter cold response via circadian clock components in Arabidopsis

  Goowon Jeong*, Myeongjune Jeon, Jinseul Kyung, Daesong Jeong, Jinwoo Shin, Yourae Shin, Daehee Hwang, Chulmin Park, Youbong Hyun, Ilha Lee

  New Phytologist

  •  @article{Jeong_2026, title={Chaperonin‐mediated winter cold response via circadian clock components in Arabidopsis}, ISSN={1469-8137}, url={http://dx.doi.org/10.1111/nph.71051}, DOI={10.1111/nph.71051}, journal={New Phytologist}, publisher={Wiley}, author={Jeong, Goowon and Jeon, Myeongjune and Kyung, Jinseul and Jeong, Daesong and Shin, Jinwoo and Shin, Yourae and Hwang, Daehee and Park, Chulmin and Hyun, Youbong and Lee, Ilha}, year={2026}, month=mar }
    

    Copied!

  2026

  Jeong, G.*, Jeon, M., Kyung, J., Jeong, D., Shin, J., Shin, Y., Hwang, D., Park, C., Hyun, Y., & Lee, I. (2026). Chaperonin‐mediated winter cold response via circadian clock components in Arabidopsis. New Phytologist. https://doi.org/10.1111/nph.71051

• Proteogenomic characterization of molecular and cellular targets for treatment-resistant subtypes in locally advanced cervical cancers

  Do Young Hyeon*, Dowoon Nam, Hye-Jin Shin, Juhee Jeong, Eunsoo Jung, Soo Young Cho, Dong Hoon Shin, Ja-Lok Ku, Hye Jung Baek, Chong Woo Yoo, Eun-Kyung Hong, Myong Cheol Lim, Sang-Jin Lee, Young-Ki Bae, Jong Kwang Kim, Jingi Bae, Wonyoung Choi, Su-Jin Kim, Seunghoon Back, Chaewon Kang, Inamul Hasan Madar, Hokeun Kim, Suhwan Kim, Duk Ki Kim, Jihyung Kang, Geon Woo Park, Ki Seok Park, Yourae Shin, Sang Soo Kim, Keehoon Jung, Daehee Hwang, Sang-Won Lee, Joo-Young Kim

  Molecular Cancer

  •  @article{Hyeon_2025, title={Proteogenomic characterization of molecular and cellular targets for treatment-resistant subtypes in locally advanced cervical cancers}, volume={24}, ISSN={1476-4598}, url={http://dx.doi.org/10.1186/s12943-025-02256-3}, DOI={10.1186/s12943-025-02256-3}, number={1}, journal={Molecular Cancer}, publisher={Springer Science and Business Media LLC}, author={Hyeon, Do Young and Nam, Dowoon and Shin, Hye-Jin and Jeong, Juhee and Jung, Eunsoo and Cho, Soo Young and Shin, Dong Hoon and Ku, Ja-Lok and Baek, Hye Jung and Yoo, Chong Woo and Hong, Eun-Kyung and Lim, Myong Cheol and Lee, Sang-Jin and Bae, Young-Ki and Kim, Jong Kwang and Bae, Jingi and Choi, Wonyoung and Kim, Su-Jin and Back, Seunghoon and Kang, Chaewon and Madar, Inamul Hasan and Kim, Hokeun and Kim, Suhwan and Kim, Duk Ki and Kang, Jihyung and Park, Geon Woo and Park, Ki Seok and Shin, Yourae and Kim, Sang Soo and Jung, Keehoon and Hwang, Daehee and Lee, Sang-Won and Kim, Joo-Young}, year={2025}, month=mar }
    

    Copied!

  2025

  Hyeon, D. Y.*, Nam, D., Shin, H.-J., Jeong, J., Jung, E., Cho, S. Y., Shin, D. H., Ku, J.-L., Baek, H. J., Yoo, C. W., Hong, E.-K., Lim, M. C., Lee, S.-J., Bae, Y.-K., Kim, J. K., Bae, J., Choi, W., Kim, S.-J., Back, S., … Kim, J.-Y. (2025). Proteogenomic characterization of molecular and cellular targets for treatment-resistant subtypes in locally advanced cervical cancers. Molecular Cancer, 24(1). https://doi.org/10.1186/s12943-025-02256-3

• The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element

  Jinseul Kyung*, Myeongjune Jeon, Goowon Jeong, Yourae Shin, Eunjoo Seo, Jihyeon Yu, Hoyeun Kim, Chung-Mo Park, Daehee Hwang, Ilha Lee

  The Plant Cell

  •  @article{Kyung_2021, title={The two clock proteins CCA1 and LHY activate
                        VIN3
                        transcription during vernalization through the vernalization-responsive cis-element}, volume={34}, ISSN={1532-298X}, url={http://dx.doi.org/10.1093/plcell/koab304}, DOI={10.1093/plcell/koab304}, number={3}, journal={The Plant Cell}, publisher={Oxford University Press (OUP)}, author={Kyung, Jinseul and Jeon, Myeongjune and Jeong, Goowon and Shin, Yourae and Seo, Eunjoo and Yu, Jihyeon and Kim, Hoyeun and Park, Chung-Mo and Hwang, Daehee and Lee, Ilha}, year={2021}, month=dec, pages={1020–1037} }
    

    Copied!

  2022

  Kyung, J.*, Jeon, M., Jeong, G., Shin, Y., Seo, E., Yu, J., Kim, H., Park, C.-M., Hwang, D., & Lee, I. (2021). The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element. The Plant Cell, 34(3), 1020–1037. https://doi.org/10.1093/plcell/koab304

• Integrative analysis of transcriptomic data for identification of T-cell activation-related mRNA signatures indicative of preterm birth.

  Jae Young Yoo*, Do Young Hyeon*, Yourae Shin*, Soo Min Kim, Young-Ah You, Daye Kim, Daehee Hwang, Young Ju Kim

  Scientific reports

  •  @article{Yoo_2021, title={Integrative analysis of transcriptomic data for identification of T-cell activation-related mRNA signatures indicative of preterm birth}, volume={11}, ISSN={2045-2322}, url={http://dx.doi.org/10.1038/s41598-021-81834-z}, DOI={10.1038/s41598-021-81834-z}, number={1}, journal={Scientific Reports}, publisher={Springer Science and Business Media LLC}, author={Yoo, Jae Young and Hyeon, Do Young and Shin, Yourae and Kim, Soo Min and You, Young-Ah and Kim, Daye and Hwang, Daehee and Kim, Young Ju}, year={2021}, month=jan }
    

    Copied!

  BK21 Four Outstanding Paper Award

  2021

  Yoo, J. Y.*, Hyeon, D. Y.*, Shin, Y.*, Kim, S. M., You, Y.-A., Kim, D., Hwang, D., & Kim, Y. J. (2021). Integrative analysis of transcriptomic data for identification of T-cell activation-related mRNA signatures indicative of preterm birth. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-81834-z

Preprint

• Chaperonin-mediated Winter Cold Response via Circadian Clock Components inArabidopsis

  Goowon Jeong*, Myeongjune Jeon, Jinseul Kyung, Daesong Jeong, Jinwoo Shin, Yourae Shin, Daehee Hwang, Youbong Hyun, Ilha Lee

  Preprint

  •  @article{Jeong_2024, title={Chaperonin-mediated Winter Cold Response via Circadian Clock Components in
                      Arabidopsis}, url={http://dx.doi.org/10.1101/2024.05.09.593290}, DOI={10.1101/2024.05.09.593290}, publisher={openRxiv}, author={Jeong, Goowon and Jeon, Myeongjune and Kyung, Jinseul and Jeong, Daesong and Shin, Jinwoo and Shin, Yourae and Hwang, Daehee and Hyun, Youbong and Lee, Ilha}, year={2024}, month=may }
    

    Copied!

  2024

  Jeong, G.*, Jeon, M., Kyung, J., Jeong, D., Shin, J., Shin, Y., Hwang, D., Hyun, Y., & Lee, I. (2024). Chaperonin-mediated Winter Cold Response via Circadian Clock Components in Arabidopsis. https://doi.org/10.1101/2024.05.09.593290

Presentation

• A Cloud-based QC Platform for Comprehensive Examination of MS-based Proteomics Data

  Yourae Shin*, Donggun Won, Sunghyun Huh, Un-Beom Kang

  Human Proteome Organization (HUPO) 2023 World Congress, Busan, Korea (Poster)

  • @misc{hupo2023, author       = {Shin, Yourae and Won, Donggun and Huh, Sunghyun and Kang, Un-Beom},title        = {A Cloud-based QC Platform for Comprehensive Examination of MS-based Proteomics Data},year         = {2023},month        = sep,address      = {Busan, Korea},organization = {Human Proteome Organization (HUPO) 2023 World Congress},}

    Copied!

  2023

  Shin, Y.*, Won, D., Huh, S., & Kang, U.-B. (2023). A Cloud-based QC Platform for Comprehensive Examination of MS-based Proteomics Data. Human Proteome Organization (HUPO) 2023 World Congress.

• MS-based Proteomics Reveals Exosomal Protein Biomarkers for Accurate Diagnosis of Cholangiocarcinoma

  Yourae Shin*, Sunghee Park, Hyunjee Jang, Jungyong Eum, Sunghyun Huh, Donguk Kim, Un-Beom Kang

  Korean Society for Extracellular Vesicles, Jeju, Korea (Poster)

  • @misc{ksev2022, author       = {Shin, Yourae and Park, Sunghee and Jang, Hyunjee and Eum, Jungyong and Huh, Sunghyun and Kim, Donguk and Kang, Un-Beom},title        = {MS-based Proteomics Reveals Exosomal Protein Biomarkers for Accurate Diagnosis of Cholangiocarcinoma},year         = {2022},month        = nov,address      = {Jeju, Korea},organization = {Korean Society for Extracellular Vesicles},}

    Copied!

  2022

  Shin, Y.*, Park, S., Jang, H., Eum, J., Huh, S., Kim, D., & Kang, U.-B. (2022). MS-based Proteomics Reveals Exosomal Protein Biomarkers for Accurate Diagnosis of Cholangiocarcinoma. Korean Society for Extracellular Vesicles.

Research Experience

Professional

• Assistant research engineer

  Jun 2022 - Jun 2024

  Bioinformatics Team

  Biomarker Research Institute (BRI), Bertis, Gyeonggi-do, Korea

  • Led diagnostic biomarker discovery based on systematic analysis of untargeted plasma proteome profiles in cholangiocarcinoma and prostate cancer.

  • Led single-cell level untargeted proteomics analysis on HeLa cell lysate for single-cell proteomics analysis workflow standardization.

  • Automated untargeted proteomics analysis and developed visualization platform for commercial proteomics solution service.

Internships

• Graduate Student Researcher

  May 2020 - May 2021

  Division of Clinical Bioinformatics (Advisor: Kwangsoo Kim)

  Seoul National University Hospital, Seoul, Korea

  • Led statistical analysis for longitudinal HbA1c prediction in type II diabetes cohort (n=55,602) based on electronic medical records (EMR) collected at SNUH from 2004 to 2020.

• Undergraduate Student Researcher

  May 2019 - Dec 2019

  Systems Biology and Medicine (SBM) Lab (Advisor: Daehee Hwang)

  Seoul National University, Seoul, Korea

  • Led transcriptomic analysis and biological pathway enrichment analysis to discover novel upstream regulator in Arabidopsis thaliana vernalization model (Jeong, G., et al. 2026).

• Undergraduate Student Researcher

  Jul 2019 - Aug 2019

  Veterinary Anatomy Lab (Advisor: Junpei Kimura)

  Seoul National University, Seoul, Korea

  • X-ray image processing for the 3D visualization of bat inner ear bone structures.

• Undergraduate Student Researcher

  Jul 2018 - Aug 2018

  Neurophysiology Lab (Advisor: Sukwoo Choi)

  Seoul National University, Seoul, Korea

  • Practiced experimental skills including perfusion, cryosection, and immunostaining in rodent model.

Teaching Experience

Teaching Assistant

• Design and Analysis of Algorithms (CS218)

  Sep 2025 - Dec 2025

  Department of Computer Science and Engineering

  University of California, Riverside, Riverside, California

• Assembly Language (CS061 Lab)

  Mar 2025 - Jun 2025

  Department of Computer Science and Engineering

  University of California, Riverside, Riverside, California

• General Biology and Laboratory (Lab)

  Sep 2020 - Dec 2020

  School of Biological Science

  Seoul National University, Seoul, Korea

• Biological Sciences Experiments (Lab)

  Mar 2020 - Jun 2020

  School of Biological Science

  Seoul National University, Seoul, Korea

• Advanced Convergence Computational Biology

  Mar 2020 - Jun 2020

  School of Biological Science

  Seoul National University, Seoul, Korea

Awards and Scholarships

• Dean's Distinguished Award

  Sep 2024 - Jun 2025

  University of California, Riverside, Riverside, California

  Full tuition and stipend

• Brain Korea 21 Four Outstanding Paper Award

  Feb 2021

  National Research Foundation of Korea, Korea

  Outstanding Paper Incentive

• Brain Korea 21 Four Scholarship

  Sep 2020 - Dec 2021

  National Research Foundation of Korea, Korea

  Full tuition

• The Presidential Science Scholarship

  Mar 2015 - Dec 2019

  Korea Student Aid Foundation, Korea

  Full tuition and stipend

Skills

Technical Expertise

• Multi-omics Analysis

  Untargeted quantitative multi-omics experience across transcriptomics, proteomics, metabolomics, and clinical (EMR/EHR) datasets.

• High-throughput Bioinformatics

  Experience developing high-throughput analysis pipelines using Snakemake and Nextflow for research and production environments.

• Interactive Visualization

  End-to-end development of automated data visualization solutions using React and modern front-end technologies.

Languages

• Korean

  Native

• English

  Full Professional Proficiency

• Japanese

  Elementary Proficiency